Basic Information
Locus ID:
Ah010444
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 9743163 | 9751562 | + | Ah010444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 136,867.34 Da | 40.36 | 105.80 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 857 | 1158 | 1.38E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 117 | 546 | 6.47E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 657 | 851 | 1.29E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 243 | 456 | 5.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 457 | 576 | 2.6E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1064 | 1186 | 5.5E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 99 | 242 | 2.2E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 909 | 981 | 1.8E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 982 | 1063 | 4.9E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 618 | 908 | 6.7E-35 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 45 | 3.4E-6 | - |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 0.01 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 329 | 354 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 780 | 805 | 0.99 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 303 | 328 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 936 | 961 | 0.013 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 173 | 198 | 2.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 511 | 536 | 83.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 9 | 50 | 2.9 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 1117 | 1152 | 500.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 618 | 659 | 8.0 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 66 | 91 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 199 | 224 | 82.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 225 | 250 | 640.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1091 | 1116 | 0.0089 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 806 | 831 | 430.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021732145.1 | F-box/LRR-repeat protein 20-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LE73 | F-box/LRR-repeat protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |