Basic Information
Locus ID:
Ah010344
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 8809382 | 8823551 | + | Ah010344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 59,298.93 Da | 43.35 | 72.85 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 9 | 98 | 2.40082E-13 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 12 | 95 | 2.5E-12 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 4 | 100 | 3.92E-18 | IPR015300 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 167 | 259 | 3.14E-12 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 152 | 266 | 1.6E-8 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 2 | 102 | 8.0E-21 | IPR015300 |
| SMART | SM01019 | B3_2 | 173 | 266 | 0.0046 | IPR003340 |
| SMART | SM01019 | B3_2 | 11 | 102 | 5.4E-10 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 9 | 102 | 11.518755 | IPR003340 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44150.1 | 0 | |
| RefSeq | XP_021738503.1 | uncharacterized protein LOC110704998 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LDZ8 | TF-B3 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15166, jg28716, jg31902 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21594, gene_2315 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003106, Ah010344 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g108670, BVRB_9g218380 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg10238, Sbi_jg12520, Sbi_jg17015, Sbi_jg48006 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20152, Seu_jg22218, Seu_jg287 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001834, GOSA_00022389 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00029, Sgl05099, Sgl51453, Sgl56741 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006488, gene:ENSEOMG00000021816 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0011180, CQ.Regalona.r1.5BG0011750 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276790 |
| Apiaceae | Apium graveolens | 2 | Ag10G02107, Ag9G00134 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705763, gene-LOC103722495 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1852.V1.1, AsparagusV1_07.3379.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G08779, Ftri16G14114, Ftri3G10534 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G15910.1, AT3G11800.1, AT3G44150.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010660m.g.v1.0, Thhalv10021362m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g10020.v2.2, Sp3g29220.v2.2, Sp5g17210.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g053230.2N, BniB02g012370.2N, BniB07g025560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G1233, Ceq05G1887, Ceq09G0019 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G1394, Cgl04G1396, Cgl05G1877, Cgl09G0023 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07480, gene.Cymno06g14130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g04690, gene.Thate04g24820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8518 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1891, evm.TU.LG08.44 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003651, Pov_00007575, Pov_00010158 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26407 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1322, AH01.142, BH01.1376, BH03.3884, CH01.1419 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213320, gene-QOZ80_3AG0223940 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0508020.1, HORVU.MOREX.r3.5HG0517050.1 |
| Poaceae | Oryza coarctata | 4 | Oco05G019050, Oco05G025540, Oco06G019940, Oco06G026400 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44560.1, LOC_Os03g57320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G056700, gene-BS78_01G142600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104524, Pt_Chr0105306, Pt_Chr0105307 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009250, Chr04G025010, Chr04G030140, Chr06G021200 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G594100, Tel5E01G667100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG054520, gene_TRIDC5AG061610 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G373400.1, TraesCS5A02G425700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb050310_P002, Zm00001eb213330_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-15287, nbis-gene-16417, nbis-gene-20507 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2615, Zma_g3172, Zma_g857 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2764, evm.TU.LG08.1876, evm.TU.LG08.427 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19360, gene.Posoc03g00130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1320, evm.TU.Scaffold_2_RagTag.266 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4925, nbisL1-mrna-6277 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18152, nbisL1-mrna-891 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4123, nbisL1-mrna-9861 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.789, evm.TU.utg000016l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016524 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2468, nbisL1-mrna-7563 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13497, nbisL1-mrna-6117 |
| Salicaceae | Populus euphratica | 3 | populus_peu08953, populus_peu12397, populus_peu25982 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606514, gene-LOC132607237 |
| Solanaceae | Solanum chilense | 2 | SOLCI006715500, SOLCI006908500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001703, gene-LOC107002142 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.15979_chr06_+, STRG.24983_chr08_-, gene_7798 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2709, TC09G0667 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30220.v3.1 |