Basic Information
Locus ID:
Ah010100
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1312_HRSCAF_2063 | 6624058 | 6629882 | + | Ah010100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 40,141.42 Da | 61.34 | 74.81 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 170 | 225 | 3.0E-20 | IPR004854 |
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 134 | 1.2E-52 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 164 | 223 | 1.0E-20 | - |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 140 | 5.8E-6 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 107 | 5.0E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021738734.1 | ubiquitin fusion degradation protein 1 homolog [Chenopodium quinoa] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LPG0 | Ubiquitin fusion degradation protein 1 homolog OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology