Basic Information
Locus ID:
Ah009061
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 102533495 | 102534751 | + | Ah009061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 44,594.32 Da | 40.19 | 86.41 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 214 | 331 | 2.1E-16 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 178 | 2.09E-15 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 186 | 332 | 2.49E-20 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 22 | 176 | 1.2E-7 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 201 | 331 | 1.8E-13 | IPR036378 |
| SMART | SM00554 | fasc_3 | 228 | 332 | 1.2E-20 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 176 | 11.552906 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 189 | 329 | 13.572813 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 397 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_021740712.1 | fasciclin-like arabinogalactan protein 1 [Chenopodium quinoa] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LQ74 | Fasciclin-like arabinogalactan protein 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology