Basic Information
Locus ID:
Ah008991
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 101823906 | 101838425 | + | Ah008991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 158,602.70 Da | 36.09 | 88.78 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 357 | 655 | 1.15181E-137 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 771 | 1072 | 9.08864E-149 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 339 | 2.92683E-147 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 75 | 333 | 2.3E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 1094 | 1383 | 1.7E-25 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 361 | 651 | 3.7E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 771 | 1072 | 3.92E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 340 | 8.37E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 356 | 655 | 5.76E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 1089 | 1387 | 7.06E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1087 | 1387 | 1.2E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 39 | 338 | 2.2E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 355 | 655 | 6.2E-44 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 769 | 1072 | 1.1E-34 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 356 | 656 | 35.791031 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 340 | 37.041523 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 771 | 1073 | 35.04398 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1089 | 1388 | 32.672909 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1424 | 1443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1427 | 1443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 738 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A7J7H7K1 | glycerophosphodiester phosphodiesterase OS=Camellia sinensis OX=4442 GN=HYC85_014889 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology