Basic Information
Locus ID:
Ah008601
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 97490763 | 97494890 | + | Ah008601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 63,236.91 Da | 40.72 | 78.08 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 56 | 3.0E-10 | IPR001810 |
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 257 | 356 | 7.1E-7 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 424 | 533 | 2.53E-25 | IPR011990 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 63 | 3.79E-15 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 420 | 543 | 9.1E-29 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 84 | 1.3E-7 | - |
| SMART | SM00028 | tpr_5 | 423 | 456 | 0.023 | IPR019734 |
| SMART | SM00028 | tpr_5 | 490 | 523 | 0.11 | IPR019734 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 3.6E-7 | IPR001810 |
| SMART | SM00028 | tpr_5 | 458 | 489 | 0.59 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 423 | 456 | 8.1719 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021755524.1 | putative F-box/kelch-repeat protein At4g22430 [Chenopodium quinoa] | 0 |
| Q1PE57 | Putative F-box/kelch-repeat protein At4g22430 OS=Arabidopsis thaliana OX=3702 GN=At4g22430 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803ML08 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology