Basic Information
Locus ID:
Ah008600
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 97476016 | 97479639 | + | Ah008600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 63,221.82 Da | 34.77 | 82.34 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 253 | 355 | 1.6E-6 | IPR011676 |
| Pfam | PF00646 | F-box domain | 10 | 47 | 4.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 66 | 1.44E-12 | IPR036047 |
| SUPERFAMILY | SSF48452 | TPR-like | 426 | 535 | 6.33E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 422 | 544 | 5.8E-29 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 46 | 2.7E-7 | - |
| SMART | SM00256 | fbox_2 | 10 | 49 | 2.3E-6 | IPR001810 |
| SMART | SM00028 | tpr_5 | 425 | 458 | 0.026 | IPR019734 |
| SMART | SM00028 | tpr_5 | 492 | 525 | 0.12 | IPR019734 |
| SMART | SM00028 | tpr_5 | 460 | 491 | 6.2 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 425 | 458 | 8.2309 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021755524.1 | putative F-box/kelch-repeat protein At4g22430 [Chenopodium quinoa] | 0 |
| Q9FIH4 | Putative F-box protein At5g42430 OS=Arabidopsis thaliana OX=3702 GN=At5g42430 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803ML08 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology