Basic Information
Locus ID:
Ah008231
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 91408540 | 91418593 | - | Ah008231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 110,258.52 Da | 47.92 | 73.52 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 664 | 690 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 480 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 556 | 592 | 1.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 443 | 831 | 9.34E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 661 | 854 | 6.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 429 | 614 | 1.1E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 554 | 592 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 481 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 738 | 783 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 690 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 784 | 827 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 731 | 2.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 601 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 561 | 595 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 664 | 691 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 482 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 482 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 579 | 593 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 579 | 593 | 2.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 468 | 482 | 2.4E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 536 | - | - |
| Coils | Coil | Coil | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021754818.1 | uncharacterized protein LOC110720126 isoform X1 [Chenopodium quinoa] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QST9 | WD repeat-containing protein 44-like OS=Spinacia oleracea OX=3562 GN=SOVF_152250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology