Basic Information
Locus ID:
Ah008135
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 89247405 | 89251151 | - | Ah008135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 26,326.49 Da | 62.00 | 75.54 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 43 | 93 | 4.4328E-23 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 44 | 97 | 1.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 39 | 105 | 2.65E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 106 | 4.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 45 | 91 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 92 | 12.607302 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 60 | 69 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 142 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_021754864.1 | E3 ubiquitin-protein ligase RMA3-like [Chenopodium quinoa] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R703 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_099420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology