Basic Information
Locus ID:
Ah008097
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 88317768 | 88323511 | - | Ah008097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 100,660.81 Da | 51.28 | 79.32 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 767 | 802 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 701 | 3.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 576 | 904 | 1.17E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 92 | 356 | 5.29E-17 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 554 | 907 | 4.6E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 95 | 357 | 4.3E-22 | - |
| SMART | SM00320 | WD40_4 | 811 | 850 | 4.9 | IPR001680 |
| SMART | SM00220 | serkin_6 | 44 | 347 | 0.0072 | IPR000719 |
| SMART | SM00320 | WD40_4 | 721 | 760 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 661 | 701 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 764 | 802 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 905 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 619 | 658 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 573 | 608 | 1.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 771 | 804 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 771 | 804 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 668 | 703 | 10.627413 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 347 | 10.011832 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 668 | 703 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 789 | 803 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 789 | 803 | 7.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 645 | 659 | 7.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 688 | 702 | 7.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 28 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
| Coils | Coil | Coil | 388 | 415 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021722829.1 | protein SPA1-RELATED 4-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LVC8 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology