halophFGD

Basic Information

Locus ID: Ah007788

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Zinc finger, C3HC4 type (RING finger)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_579_HRSCAF_742	79611985	79614694	-	Ah007788

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.56	10,446.88 Da	66.33	74.32	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Coils	Coil	Coil	33	53	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27950.1	Ring/U-Box superfamily protein.
RefSeq	XP_021729856.1	uncharacterized protein LOC110696831 [Chenopodium quinoa]
TrEMBL	A0A803N6H5	RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14517, jg16511, jg2805, jg34378, jg35947, jg37569
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21208, gene_9663
Amaranthaceae	Atriplex hortensis	4	Ah007353, Ah007788, Ah011681, Ah031405
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11971, Sbi_jg18110, Sbi_jg36458, Sbi_jg46904
Amaranthaceae	Salicornia europaea	2	Seu_jg21194, Seu_jg4471
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009534, GOSA_00027648
Amaranthaceae	Suaeda glauca	6	Sgl20760, Sgl20764, Sgl21372, Sgl26148, Sgl80382, Sgl82842
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008682, gene:ENSEOMG00000015230 ... gene:ENSEOMG00000028189, gene:ENSEOMG00000037409, gene:ENSEOMG00000041756, gene:ENSEOMG00000052277
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0015770, CQ.Regalona.r1.4BG0016260 ... CQ.Regalona.r1.9AG0009930, CQ.Regalona.r1.9BG0012480
Anacardiaceae	Pistacia vera	2	pistato.v30057560, pistato.v30170380
Apiaceae	Apium graveolens	4	Ag10G00643, Ag11G04564, Ag2G01013, Ag2G01014
Arecaceae	Cocos nucifera	4	COCNU_07G011290, COCNU_08G010470, COCNU_09G007960 ... COCNU_10G008380
Arecaceae	Phoenix dactylifera	3	gene-LOC103698680, gene-LOC103716994, gene-LOC103719555
Asparagaceae	Asparagus officinalis	3	AsparagusV1_07.2095.V1.1, AsparagusV1_07.2096.V1.1 ... AsparagusV1_10.1558.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G27602, Ftri8G33871
Brassicaceae	Arabidopsis thaliana	2	AT2G27950.1, AT5G04460.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10016236m.g.v1.0, Thhalv10020131m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08780.v2.2, Sp4g10770.v2.2, Sp6g38290.v2.2
Brassicaceae	Brassica nigra	5	BniB01g054510.2N, BniB02g056050.2N, BniB02g056060.2N ... BniB06g016760.2N, BniB07g057630.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0530, Ceq05G1634
Casuarinaceae	Casuarina glauca	2	Cgl02G0551, Cgl05G1628
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g09520, gene.Cymno10g02710, gene.Cymno14g01200
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g19940, gene.Thate08g01740, gene.Thate08g22490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-481
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1148, evm.TU.LG09.809
Plantaginaceae	Plantago ovata	3	Pov_00015907, Pov_00035050, Pov_00040254
Plumbaginaceae	Limonium bicolor	4	Lb1G05329, Lb3G19559, Lb3G19560, Lb3G20631
Poaceae	Echinochloa crus-galli	7	AH01.5020, AH07.3999, BH03.1292, BH07.3810, CH07.3868 ... Contig866.37, Contig866.38
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0151100, gene-QOZ80_2BG0206510 ... gene-QOZ80_3AG0230430, gene-QOZ80_3BG0297420, gene-QOZ80_6AG0525080, gene-QOZ80_6BG0478710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0331660.1, HORVU.MOREX.r3.4HG0414400.1 ... HORVU.MOREX.r3.6HG0631660.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006873, gene-QYE76_018201, gene-QYE76_026812 ... gene-QYE76_026864, gene-QYE76_071767
Poaceae	Oryza coarctata	6	Oco03G025790, Oco04G026280, Oco05G000420, Oco06G000410 ... Oco17G012320, Oco18G012240
Poaceae	Oryza sativa	3	LOC_Os02g57750.1, LOC_Os03g01720.1, LOC_Os09g39690.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G513200, gene-BS78_02G135100 ... gene-BS78_04G325100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100969, Pt_Chr0105824, Pt_Chr0604587, Pt_Chr0605649 ... Pt_Chr0700641
Poaceae	Sporobolus alterniflorus	8	Chr09G026680, Chr10G005430, Chr11G013770, Chr12G000330 ... Chr13G000440, Chr14G008280, Chr15G000360, Chr21G008450
Poaceae	Thinopyrum elongatum	2	Tel4E01G014000, Tel6E01G746700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG047270, gene_TRIDC4BG001400 ... gene_TRIDC5AG075100, gene_TRIDC6AG059490, gene_TRIDC6BG070490
Poaceae	Triticum aestivum	8	TraesCS4A02G311200.1, TraesCS4B02G003100.1 ... TraesCS4D02G003000.2, TraesCS4D02G354300.1, TraesCS5A02G529500.1, TraesCS6A02G405400.1, TraesCS6B02G449800.2, TraesCS6D02G389100.1
Poaceae	Zea mays	3	Zm00001eb000600_P001, Zm00001eb190930_P002 ... Zm00001eb307770_P002
Poaceae	Zoysia japonica	3	nbis-gene-31799, nbis-gene-3200, nbis-gene-39764
Poaceae	Zoysia macrostachya	3	Zma_g17454, Zma_g2277, Zma_g32020
Portulacaceae	Portulaca oleracea	7	evm.TU.LG06.1040, evm.TU.LG07.1534, evm.TU.LG08.1488 ... evm.TU.LG11.481, evm.TU.LG15.1710, evm.TU.LG15.1711, evm.TU.LG22.380
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g13730, gene.Posoc06g05950
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.833, evm.TU.Scaffold_4_RagTag.1566
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16588, nbisL1-mrna-26175
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19185, nbisL1-mrna-3183, nbisL1-mrna-5507
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17157, nbisL1-mrna-21789, nbisL1-mrna-21790 ... nbisL1-mrna-4388
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.315, evm.TU.utg000008l.852 ... evm.TU.utg000025l.50
Rhizophoraceae	Kandelia obovata	3	Maker00000271, Maker00004061, Maker00012369
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15898, nbisL1-mrna-16309, nbisL1-mrna-2200
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21424, nbisL1-mrna-23799, nbisL1-mrna-9601
Salicaceae	Populus euphratica	5	populus_peu06187, populus_peu08312, populus_peu20028 ... populus_peu20029, populus_peu35391
Solanaceae	Lycium barbarum	2	gene-LOC132600490, gene-LOC132612596
Solanaceae	Solanum chilense	3	SOLCI001834700, SOLCI001952400, SOLCI004828500
Solanaceae	Solanum pennellii	4	gene-LOC107004761, gene-LOC107004788, gene-LOC107012117 ... gene-LOC107022532
Tamaricaceae	Reaumuria soongarica	2	STRG.32408_chr09_+, gene_8592
Tamaricaceae	Tamarix chinensis	3	TC02G1057, TC03G1905, TC11G1621
Zosteraceae	Zostera marina	2	Zosma05g26370.v3.1, Zosma06g29220.v3.1