Basic Information
Locus ID:
Ah007650
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 74775748 | 74801008 | - | Ah007650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 105,401.14 Da | 40.89 | 88.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 1.60548E-89 | - |
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 3.83533E-52 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 1.2E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 598 | 661 | 2.5E-11 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 217 | 322 | 4.7E-19 | IPR001650 |
| Pfam | PF09382 | RQC domain | 516 | 552 | 1.2E-4 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 8.5E-12 | IPR032284 |
| Pfam | PF14493 | Helix-turn-helix domain | 704 | 798 | 2.8E-16 | IPR029491 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 337 | 3.58E-52 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 592 | 667 | 1.72E-14 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 516 | 552 | 6.53E-5 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 436 | 4.08E-5 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 337 | 489 | 5.1E-26 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 196 | 332 | 2.6E-36 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 1.4E-72 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 592 | 673 | 6.2E-15 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 515 | 553 | 3.1E-7 | IPR036388 |
| SMART | SM00956 | RQC_2 | 404 | 603 | 0.002 | IPR018982 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 1.7E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 5.8E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 436 | 3.3E-144 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 19.188023 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 593 | 673 | 16.786495 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 21.159939 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| O93530 | Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN OS=Xenopus laevis OX=8355 GN=wrn PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZ07 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology