Basic Information
Locus ID:
Ah007353
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 57830269 | 57844972 | + | Ah007353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 101,330.86 Da | 65.65 | 69.11 | -0.90 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 836 | 876 | 1.16463E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 834 | 881 | 7.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 836 | 882 | 2.02E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 819 | 887 | 1.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 837 | 876 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 739 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 194 | - | - |
| Coils | Coil | Coil | 768 | 788 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021718873.1 | uncharacterized protein LOC110686567 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803NAQ2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology