Basic Information
Locus ID:
Ah006240
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 16176172 | 16181102 | - | Ah006240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 94,679.23 Da | 47.00 | 84.45 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 495 | 532 | 1.8E-6 | IPR001810 |
| Pfam | PF00646 | F-box domain | 8 | 43 | 3.4E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 51 | 4.06E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 495 | 543 | 3.4E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 1.3E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 488 | 548 | 3.9E-8 | - |
| SMART | SM00256 | fbox_2 | 493 | 533 | 0.0015 | IPR001810 |
| SMART | SM00256 | fbox_2 | 3 | 43 | 1.3 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 422 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_021731453.1 | putative F-box protein At3g16210 [Chenopodium quinoa] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KPU2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah000393, Ah000394, Ah000399, Ah003949, Ah003953, Ah003954 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g071880, BVRB_5g113260 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg11627, Sbi_jg45701, Sbi_jg46774, Sbi_jg46778 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg10869, Seu_jg18452, Seu_jg20876, Seu_jg20880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001449, GOSA_00014071 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl33340, Sgl38687, Sgl45685, Sgl50446, Sgl67624, Sgl67625 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006113, gene:ENSEOMG00000027208 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0011210, CQ.Regalona.r1.4BG0011390 ... |