Basic Information
Locus ID:
Ah005926
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 11693075 | 11696465 | + | Ah005926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 65,195.80 Da | 39.14 | 97.62 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 242 | 478 | 1.5E-71 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 57 | 148 | 1.7E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 48 | 149 | 2.12E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 45 | 153 | 2.6E-9 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 59 | 132 | 10.116544 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 242 | 503 | 69.023529 | IPR027356 |
| Coils | Coil | Coil | 530 | 557 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64330.2 | Phototropic-responsive NPH3 family protein. Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. | 0 |
| RefSeq | XP_021742419.1 | root phototropism protein 3-like [Chenopodium quinoa] | 0 |
| Q9FMF5 | Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPE1 | NPH3 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10452, gene_24916 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005926 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081670 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008631, gene:ENSEOMG00000028674 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009380, CQ.Regalona.r1.4BG0009520 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30085250, pistato.v30086370 |
| Apiaceae | Apium graveolens | 1 | Ag1G00457 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1230 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2420, Cgl06G1283 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2407 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.628, evm.TU.LG22.1221 |
| Salicaceae | Populus euphratica | 1 | populus_peu15768 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645883 |
| Solanaceae | Solanum chilense | 1 | SOLCI000021300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005985 |