Basic Information
Locus ID:
Ah005787
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
zinc finger (Ran-binding) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 10012468 | 10020876 | - | Ah005787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 104,214.54 Da | 57.41 | 41.51 | -1.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 351 | 379 | 2.4E-10 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 385 | 412 | 2.8E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 344 | 380 | 2.35E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 343 | 381 | 5.8E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 382 | 413 | 2.5E-8 | - |
| SMART | SM00547 | zf_4 | 386 | 410 | 2.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 353 | 377 | 2.9E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 384 | 413 | 9.450083 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 351 | 380 | 10.274413 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 388 | 407 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 355 | 374 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 918 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 766 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 345 | - | - |
| Coils | Coil | Coil | 64 | 91 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021838406.1 | uncharacterized protein LOC110778153 [Spinacia oleracea] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KP54 | Zinc finger protein VAR3, chloroplastic OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology