Basic Information
Locus ID:
Ah005700
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 9079827 | 9094438 | - | Ah005700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 120,222.28 Da | 36.61 | 81.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 484 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 869 | 902 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 410 | 907 | 5.26E-39 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 336 | 440 | 3.77E-8 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 740 | 1048 | 1.28E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 920 | 1061 | 2.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 511 | 664 | 1.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 510 | 7.5E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 690 | 919 | 2.8E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 775 | 817 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 820 | 860 | 2.2 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1008 | 1049 | 64.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 902 | 8.2E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 520 | 563 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 952 | 994 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 437 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0042 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 584 | 615 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 870 | 905 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 870 | 911 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.475842 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1051 | 1088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1088 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KNW6 | Topless-related protein 3-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology