halophFGD

Basic Information

Locus ID: Ah005633

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: F-Box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_579_HRSCAF_742	8421069	8425148	-	Ah005633

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.13	36,527.67 Da	51.88	78.97	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14299	Phloem protein 2	127	316	1.0E-53	IPR025886
SUPERFAMILY	SSF81383	F-box domain	27	103	2.09E-10	IPR036047

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09155.1	phloem protein 2-B15.
RefSeq	XP_021742678.1	putative F-box protein PP2-B12 [Chenopodium quinoa]
Swiss-Prot	Q9FLU7	Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1
TrEMBL	A0A803KNQ7	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg26261, jg26584, jg26585, jg26586, jg26587, jg27683 ... jg27796, jg27797, jg28241, jg36051
Aizoaceae	Mesembryanthemum crystallinum	6	gene_10357, gene_11968, gene_19524, gene_19525, gene_19526 ... gene_19527
Amaranthaceae	Atriplex hortensis	8	Ah000951, Ah000957, Ah000967, Ah000977, Ah000978, Ah005633 ... Ah005706, Ah009384
Amaranthaceae	Beta vulgaris	5	BVRB_2g028750, BVRB_3g060530, BVRB_4g076140, BVRB_4g076920 ... BVRB_4g080830
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17186, Sbi_jg17262, Sbi_jg22102, Sbi_jg61881
Amaranthaceae	Salicornia europaea	3	Seu_jg16029, Seu_jg446, Seu_jg516
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00004389, GOSA_00008648, GOSA_00008649, GOSA_00015379 ... GOSA_00015435
Amaranthaceae	Suaeda glauca	7	Sgl13154, Sgl13155, Sgl18374, Sgl24437, Sgl29612, Sgl66480 ... Sgl70814
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000004164, gene:ENSEOMG00000009751 ... gene:ENSEOMG00000010626, gene:ENSEOMG00000010882, gene:ENSEOMG00000016729, gene:ENSEOMG00000017157, gene:ENSEOMG00000020094, gene:ENSEOMG00000024533, gene:ENSEOMG00000025981, gene:ENSEOMG00000025998, gene:ENSEOMG00000026918, gene:ENSEOMG00000028028, gene:ENSEOMG00000037026, gene:ENSEOMG00000041436, gene:ENSEOMG00000042358, gene:ENSEOMG00000043266, gene:ENSEOMG00000051148, gene:ENSEOMG00000052332
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.2AG0017440, CQ.Regalona.r1.2BG0019200 ... CQ.Regalona.r1.4AG0007100, CQ.Regalona.r1.4AG0007110, CQ.Regalona.r1.4AG0007720, CQ.Regalona.r1.4BG0007310, CQ.Regalona.r1.4BG0007320, CQ.Regalona.r1.4BG0007890, CQ.Regalona.r1.5AG0021310, CQ.Regalona.r1.5AG0027840, CQ.Regalona.r1.5AG0027850, CQ.Regalona.r1.7BG0007230
Anacardiaceae	Pistacia vera	10	pistato.v30081670, pistato.v30097540, pistato.v30097930 ... pistato.v30097940, pistato.v30097950, pistato.v30241010, pistato.v30241020, pistato.v30241030, pistato.v30241090, pistato.v30241100
Apiaceae	Apium graveolens	7	Ag10G01864, Ag11G03601, Ag2G01954, Ag5G02651, Ag7G00957 ... Ag7G01461, Ag9G01321
Arecaceae	Cocos nucifera	3	COCNU_08G011730, COCNU_09G009650, COCNU_09G009660
Arecaceae	Phoenix dactylifera	11	gene-LOC103706934, gene-LOC103711894, gene-LOC103717148 ... gene-LOC103717149, gene-LOC103723234, gene-LOC120103899, gene-LOC120104642, gene-LOC120104643, gene-LOC120107948, gene-LOC120107949, gene-LOC120108109
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.1084.V1.1, AsparagusV1_01.744.V1.1 ... AsparagusV1_01.745.V1.1, AsparagusV1_04.136.V1.1, AsparagusV1_07.1969.V1.1, AsparagusV1_10.1919.V1.1
Asteraceae	Flaveria trinervia	8	Ftri12G20025, Ftri15G04606, Ftri15G13811, Ftri17G15479 ... Ftri4G02323, Ftri4G02689, Ftri4G28510, Ftri8G20905
Brassicaceae	Arabidopsis thaliana	15	AT1G09155.1, AT1G56240.1, AT1G56250.1, AT1G80110.1 ... AT2G02230.1, AT2G02240.1, AT2G02250.1, AT2G02280.1, AT2G02300.1, AT2G02310.1, AT2G02320.1, AT2G02340.1, AT2G02350.1, AT2G02360.1, AT5G24560.1
Brassicaceae	Eutrema salsugineum	12	Thhalv10004545m.g.v1.0, Thhalv10004729m.g.v1.0 ... Thhalv10004797m.g.v1.0, Thhalv10004854m.g.v1.0, Thhalv10004855m.g.v1.0, Thhalv10005290m.g.v1.0, Thhalv10005433m.g.v1.0, Thhalv10005457m.g.v1.0, Thhalv10008383m.g.v1.0, Thhalv10019836m.g.v1.0, Thhalv10024163m.g.v1.0, Thhalv10026793m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g07740.v2.2, Sp2g06670.v2.2, Sp2g13610.v2.2 ... Sp2g13620.v2.2, Sp2g13630.v2.2, Sp2g13635.v2.2, Sp2g13640.v2.2, Sp2g22810.v2.2, Sp5g35690.v2.2
Brassicaceae	Brassica nigra	14	BniB01g041580.2N, BniB02g065410.2N, BniB02g077370.2N ... BniB03g003110.2N, BniB04g009070.2N, BniB04g009080.2N, BniB04g009090.2N, BniB04g009100.2N, BniB04g009140.2N, BniB04g009150.2N, BniB04g030680.2N, BniB06g068630.2N, BniB07g044950.2N, BniB08g021580.2N
Casuarinaceae	Casuarina equisetifolia	8	Ceq01G0698, Ceq01G0704, Ceq01G0751, Ceq06G1148, Ceq06G2210 ... Ceq07G0757, Ceq07G0758, Ceq07G0760
Casuarinaceae	Casuarina glauca	13	Cgl01G0818, Cgl01G0821, Cgl01G0872, Cgl01G0873, Cgl01G0882 ... Cgl06G1197, Cgl06G1198, Cgl06G2329, Cgl07G0805, Cgl07G0806, Cgl07G0807, Cgl07G0808, Cgl07G0812
Cymodoceaceae	Cymodocea nodosa	9	gene.Cymno10g00270, gene.Cymno10g00300, gene.Cymno10g00310 ... gene.Cymno10g00320, gene.Cymno10g00330, gene.Cymno10g00470, gene.Cymno10g00480, gene.Cymno16g02940, gene.Cymno16g02970
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g09040, gene.Thate08g24510, gene.Thate08g24520 ... gene.Thate08g24550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12589, nbisL1-mrna-8031
Nitrariaceae	Nitraria sibirica	9	evm.TU.LG03.1736, evm.TU.LG03.2499, evm.TU.LG03.2500 ... evm.TU.LG04.902, evm.TU.LG04.903, evm.TU.LG04.904, evm.TU.LG05.327, evm.TU.LG05.334, evm.TU.LG11.600
Plantaginaceae	Plantago ovata	8	Pov_00014694, Pov_00014703, Pov_00017069, Pov_00021333 ... Pov_00021339, Pov_00028630, Pov_00029267, Pov_00039250
Plumbaginaceae	Limonium bicolor	8	Lb0G37779, Lb1G06642, Lb1G06828, Lb1G06829, Lb1G06834 ... Lb1G07270, Lb1G07271, Lb3G16359
Poaceae	Echinochloa crus-galli	14	AH07.3912, AH07.3913, AH07.3914, AH09.680, BH02.3243 ... BH04.110, BH04.1506, BH07.3720, BH07.3721, BH07.3722, BH09.569, CH05.91, CH07.3781, CH07.3783
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0149990, gene-QOZ80_2AG0150020 ... gene-QOZ80_2AG0150030, gene-QOZ80_2AG0150040, gene-QOZ80_2BG0204200, gene-QOZ80_2BG0205460, gene-QOZ80_2BG0205480
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0195980.1, HORVU.MOREX.r3.5HG0536570.1 ... HORVU.MOREX.r3.6HG0628210.1, HORVU.MOREX.r3.6HG0628610.1, HORVU.MOREX.r3.6HG0628630.1, HORVU.MOREX.r3.7HG0644240.1
Poaceae	Lolium multiflorum	16	gene-QYE76_015147, gene-QYE76_018750, gene-QYE76_026336 ... gene-QYE76_026340, gene-QYE76_026342, gene-QYE76_026343, gene-QYE76_026347, gene-QYE76_026352, gene-QYE76_026679, gene-QYE76_026684, gene-QYE76_026685, gene-QYE76_026687, gene-QYE76_026692, gene-QYE76_028650, gene-QYE76_059712, gene-QYE76_059721
Poaceae	Oryza coarctata	3	Oco03G024990, Oco03G025000, Oco03G025010
Poaceae	Oryza sativa	9	LOC_Os02g56750.1, LOC_Os02g56760.1, LOC_Os02g56770.1 ... LOC_Os02g56800.1, LOC_Os02g56810.1, LOC_Os02g56820.1, LOC_Os02g56840.1, LOC_Os12g03594.1, LOC_Os12g03740.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G092100, gene-BS78_04G315700 ... gene-BS78_04G315900, gene-BS78_04G316000
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0106749, Pt_Chr0201150, Pt_Chr0404949, Pt_Chr0404956 ... Pt_Chr0502551, Pt_Chr0604253, Pt_Chr0604259, Pt_Chr0604263, Pt_Chr0604265, Pt_Chr0604317, Pt_Chr0604347
Poaceae	Sporobolus alterniflorus	11	Chr07G017390, Chr09G016820, Chr09G016840, Chr0G014090 ... Chr13G001040, Chr13G001050, Chr13G001060, Chr13G001070, Chr13G001090, Chr15G001010, Chr31G005150
Poaceae	Thinopyrum elongatum	13	Tel4E01G442300, Tel5E01G881600, Tel6E01G674500 ... Tel6E01G674900, Tel6E01G690300, Tel6E01G692500, Tel6E01G692600, Tel6E01G693200, Tel6E01G694300, Tel6E01G694700, Tel6E01G694800, Tel7E01G134300, Tel7E01G134500
Poaceae	Triticum dicoccoides	13	gene_TRIDC4AG005800, gene_TRIDC4BG045500 ... gene_TRIDC5BG082570, gene_TRIDC6AG056820, gene_TRIDC6AG056990, gene_TRIDC6AG057120, gene_TRIDC6AG057130, gene_TRIDC6BG066550, gene_TRIDC6BG066560, gene_TRIDC6BG066580, gene_TRIDC6BG066590, gene_TRIDC7AG006840, gene_TRIDC7BG041960
Poaceae	Triticum aestivum	33	TraesCS3B02G018900.1, TraesCS4A02G041300.1 ... TraesCS4A02G319200.1, TraesCS4B02G262300.1, TraesCS4D02G262300.1, TraesCS5B02G558800.1, TraesCS5B02G559800.1, TraesCS5B02G560000.1, TraesCS5B02G560100.1, TraesCS5D02G035000.1, TraesCS5D02G566000.2, TraesCS6A02G381900.1, TraesCS6A02G383100.1, TraesCS6A02G383900.1, TraesCS6A02G384000.2, TraesCS6A02G384100.1, TraesCS6B02G421100.1, TraesCS6B02G422300.1, TraesCS6B02G422400.1, TraesCS6B02G423200.1, TraesCS6B02G423400.1, TraesCS6B02G423500.1, TraesCS6D02G366600.1, TraesCS6D02G368000.1, TraesCS6D02G368900.1, TraesCS6D02G369000.1, TraesCS6D02G369100.1, TraesCS6D02G369200.1, TraesCS7A02G063400.1, TraesCS7A02G063600.1, TraesCS7D02G058100.1, TraesCSU02G190600.1, TraesCSU02G197600.1
Poaceae	Zea mays	4	Zm00001eb191600_P001, Zm00001eb202360_P001 ... Zm00001eb258580_P001, Zm00001eb258590_P001
Poaceae	Zoysia japonica	6	nbis-gene-39833, nbis-gene-39835, nbis-gene-41561 ... nbis-gene-8343, nbis-gene-8344, nbis-gene-8345
Poaceae	Zoysia macrostachya	6	Zma_g14679, Zma_g14680, Zma_g14681, Zma_g17391, Zma_g17393 ... Zma_g17928
Portulacaceae	Portulaca oleracea	17	evm.TU.LG02.920, evm.TU.LG02.921, evm.TU.LG02.922 ... evm.TU.LG02.923, evm.TU.LG05.1901, evm.TU.LG08.771, evm.TU.LG09.1046, evm.TU.LG09.1047, evm.TU.LG09.1048, evm.TU.LG09.1049, evm.TU.LG09.1050, evm.TU.LG09.1051, evm.TU.LG18.1274, evm.TU.LG18.1919, evm.TU.LG20.3, evm.TU.LG20.609, evm.TU.LG22.1160
Posidoniaceae	Posidonia oceanica	6	gene.Posoc06g00800, gene.Posoc06g00830, gene.Posoc06g00840 ... gene.Posoc06g00850, gene.Posoc06g00860, gene.Posoc08g09810
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.57467.1, evm.TU.57467.2, evm.TU.Scaffold_1_RagTag.525 ... evm.TU.Scaffold_1_RagTag.92, evm.TU.Scaffold_1_RagTag.93, evm.TU.Scaffold_3_RagTag.1364, evm.TU.Scaffold_6_RagTag.966
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-15701, nbisL1-mrna-1682, nbisL1-mrna-7539 ... nbisL1-mrna-8184, nbisL1-mrna-8185
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-18820, nbisL1-mrna-2542, nbisL1-mrna-5157
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-2609, nbisL1-mrna-5177, nbisL1-mrna-5178 ... nbisL1-mrna-5629, nbisL1-mrna-834
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000011l.609, evm.TU.utg000012l.378 ... evm.TU.utg000012l.67, evm.TU.utg000019l.421
Rhizophoraceae	Kandelia obovata	4	Maker00002077, Maker00007710, Maker00010892, Maker00011388
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12235, nbisL1-mrna-15155, nbisL1-mrna-19917 ... nbisL1-mrna-7891, nbisL1-mrna-8421, nbisL1-mrna-8422
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-18137, nbisL1-mrna-4358, nbisL1-mrna-730 ... nbisL1-mrna-731, nbisL1-mrna-82, nbisL1-mrna-83
Salicaceae	Populus euphratica	7	populus_peu04059, populus_peu04655, populus_peu04657 ... populus_peu04659, populus_peu13026, populus_peu13028, populus_peu15654
Solanaceae	Lycium barbarum	23	gene-LOC132598897, gene-LOC132601942, gene-LOC132602643 ... gene-LOC132603242, gene-LOC132604360, gene-LOC132604362, gene-LOC132604366, gene-LOC132604367, gene-LOC132604368, gene-LOC132610438, gene-LOC132614868, gene-LOC132615391, gene-LOC132615982, gene-LOC132628789, gene-LOC132640043, gene-LOC132640271, gene-LOC132642231, gene-LOC132642237, gene-LOC132642366, gene-LOC132642367, gene-LOC132645995, gene-LOC132645996, gene-LOC132645997
Solanaceae	Solanum chilense	12	SOLCI000857300, SOLCI000857400, SOLCI000857500 ... SOLCI002045200, SOLCI002450900, SOLCI003364100, SOLCI003364200, SOLCI003810900, SOLCI004928500, SOLCI005163600, SOLCI005827000, SOLCI005949500
Solanaceae	Solanum pennellii	11	gene-LOC107002937, gene-LOC107005456, gene-LOC107005458 ... gene-LOC107006711, gene-LOC107010981, gene-LOC107015823, gene-LOC107017505, gene-LOC107018859, gene-LOC107019907, gene-LOC107027555, gene-LOC107028960
Tamaricaceae	Reaumuria soongarica	6	MSTRG.11737_chr07_-, STRG.10298_chr07_+, STRG.10300_chr07_+ ... gene_18135, gene_5887, gene_9593
Tamaricaceae	Tamarix chinensis	5	TC02G0872, TC02G1514, TC02G3144, TC02G3172, TC02G3175
Zosteraceae	Zostera marina	8	Zosma01g38750.v3.1, Zosma02g01350.v3.1, Zosma02g01380.v3.1 ... Zosma02g01390.v3.1, Zosma03g27220.v3.1, Zosma05g08470.v3.1, Zosma05g08550.v3.1, Zosma06g07760.v3.1