Basic Information
Locus ID:
Ah005360
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 5394438 | 5397857 | - | Ah005360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 54,084.59 Da | 39.99 | 78.36 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 121 | 443 | 5.8E-87 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 91 | 482 | 2.01E-123 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 75 | 481 | 8.2E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 283 | 304 | 8.6 | IPR006626 |
| SMART | SM00710 | pbh1 | 306 | 326 | 9500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 365 | 386 | 5900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 336 | 357 | 0.77 | IPR006626 |
| SMART | SM00710 | pbh1 | 256 | 282 | 420.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 313 | 326 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021734520.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KN40 | Polygalacturonase At1g80170 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology