Basic Information
Locus ID:
Ah005162
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 3285645 | 3294402 | - | Ah005162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 243,724.11 Da | 38.89 | 104.31 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1932 | 2204 | 7.2E-44 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 827 | 1097 | 8.1E-45 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1169 | 1208 | 7.1E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 574 | 633 | 1.8E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 66 | 3.3E-7 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1916 | 2206 | 3.51E-68 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 1505 | 1834 | 4.08E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 809 | 1099 | 1.48E-71 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 377 | 735 | 1.33E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 1190 | 1538 | 3.74E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 47 | 423 | 7.14E-69 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 257 | 1.1E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1517 | 1852 | 1.3E-86 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 189 | 5.1E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1167 | 1316 | 4.8E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1412 | 1516 | 7.8E-28 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1900 | 2006 | 1.4E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 787 | 899 | 1.8E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1317 | 1411 | 3.6E-23 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 900 | 1119 | 4.6E-58 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2007 | 2213 | 1.8E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 499 | 743 | 1.5E-57 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 258 | 498 | 2.7E-67 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 1234 | 1258 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1282 | 1306 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 670 | 693 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1520 | 1544 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 116 | 8.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 596 | 619 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 620 | 644 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1736 | 1760 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 140 | 164 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1786 | 1809 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 357 | 381 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 236 | 260 | 95.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1424 | 1448 | 79.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 572 | 598 | 350.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1424 | 1456 | 520.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1786 | 1807 | 740.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1472 | 1501 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1234 | 1255 | 83.0 | - |
| SMART | SM00220 | serkin_6 | 1930 | 2210 | 6.6E-31 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 670 | 695 | 440.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 236 | 266 | 280.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1282 | 1305 | 570.0 | - |
| SMART | SM00369 | LRR_typ_2 | 454 | 477 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 309 | 333 | 40.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 823 | 1106 | 1.2E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 1472 | 1496 | 63.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 92 | 113 | 310.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 823 | 1106 | 36.72509 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1930 | 2213 | 35.354092 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 829 | 851 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1936 | 1959 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 2052 | 2064 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 945 | 957 | - | IPR008271 |
| Coils | Coil | Coil | 480 | 500 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 0 |
| RefSeq | XP_021772294.1 | receptor-like protein kinase [Chenopodium quinoa] | 0 |
| P93194 | Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L438 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah005162 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0003050, CQ.Regalona.r1.4BG0003210 |