Basic Information
Locus ID:
Ah005159
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 3243430 | 3252770 | + | Ah005159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 30,255.08 Da | 54.94 | 64.42 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 136 | 186 | 9.49945E-18 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 136 | 169 | 5.9E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 217 | 2.01E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 219 | 2.6E-19 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 132 | 265 | 20.380213 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 182 | 9.641949 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021772293.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Chenopodium quinoa] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMM1 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah005159 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042136 |
| Apiaceae | Apium graveolens | 2 | Ag1G00014, Ag5G02870 |
| Brassicaceae | Brassica nigra | 1 | BniB06g044600.2N |
| Poaceae | Zea mays | 2 | Zm00001eb309470_P001, Zm00001eb383420_P001 |