Basic Information
Locus ID:
Ah005123
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 2874741 | 2875760 | - | Ah005123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 37,304.35 Da | 65.67 | 53.54 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 205 | 246 | 1.85246E-24 | - |
| Pfam | PF13639 | Ring finger domain | 204 | 246 | 2.7E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 6.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 252 | 3.31E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 251 | 1.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 205 | 245 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 205 | 246 | 12.164712 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 324 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021772245.1 | probable E3 ubiquitin-protein ligase RHC1A [Chenopodium quinoa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMI6 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology