Basic Information
Locus ID:
Ah005078
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 2482476 | 2496686 | - | Ah005078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 85,611.45 Da | 56.67 | 71.74 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 93 | 232 | 2.37963E-33 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 530 | 610 | 2.1E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 93 | 237 | 8.2E-31 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 93 | 287 | 1.0E-33 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 62 | 286 | 1.3E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 90 | 281 | 3.5E-27 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 84 | 284 | 29.813625 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 424 | - | - |
| Coils | Coil | Coil | 579 | 613 | - | - |
| Coils | Coil | Coil | 113 | 133 | - | - |
| Coils | Coil | Coil | 730 | 757 | - | - |
| Coils | Coil | Coil | 520 | 561 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021734234.1 | rho GTPase-activating protein 7-like [Chenopodium quinoa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMD9 | Rho GTPase-activating protein 7-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology