Basic Information
Locus ID:
Ah005001
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 1708120 | 1713513 | + | Ah005001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 59,590.46 Da | 33.56 | 85.01 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 52 | 310 | 1.96882E-140 | - |
| Pfam | PF00069 | Protein kinase domain | 53 | 311 | 9.9E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 429 | 495 | 3.9E-13 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 371 | 420 | 2.2E-5 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 31 | 326 | 5.13E-88 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 340 | 520 | 1.46E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 319 | 4.4E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 320 | 497 | 3.5E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 138 | 1.1E-26 | - |
| SMART | SM00220 | serkin_6 | 53 | 311 | 3.1E-101 | IPR000719 |
| SMART | SM00054 | efh_1 | 394 | 422 | 0.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 469 | 497 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 430 | 458 | 0.0025 | IPR002048 |
| SMART | SM00054 | efh_1 | 358 | 386 | 0.6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 354 | 389 | 11.417016 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 465 | 500 | 14.206556 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 311 | 49.926247 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 426 | 461 | 12.755995 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 390 | 425 | 8.962221 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 403 | 415 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 59 | 86 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 439 | 451 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 173 | 185 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 478 | 490 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_021772090.1 | calcium-dependent protein kinase 8-like [Chenopodium quinoa] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KM73 | Calcium-dependent protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology