Basic Information
Locus ID:
Ah004984
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 1563431 | 1584695 | + | Ah004984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 111,277.74 Da | 34.24 | 105.84 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 52 | 502 | 8.22126E-124 | IPR044644 |
| Pfam | PF12854 | PPR repeat | 731 | 761 | 2.5E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 870 | 916 | 2.8E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 807 | 852 | 2.2E-10 | IPR002885 |
| Pfam | PF01554 | MatE | 164 | 255 | 3.8E-13 | IPR002528 |
| Pfam | PF01554 | MatE | 314 | 467 | 4.7E-15 | IPR002528 |
| Pfam | PF01535 | PPR repeat | 773 | 799 | 0.54 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 627 | 821 | 5.8E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 825 | 927 | 1.9E-17 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 874 | 905 | 3.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 737 | 769 | 3.6E-6 | IPR002885 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 44 | 482 | 9.9E-131 | IPR002528 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 808 | 840 | 6.1E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 871 | 905 | 11.936913 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 805 | 839 | 11.060009 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 734 | 768 | 10.215989 | IPR002885 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51340.2 | MATE efflux family protein. | 0 |
| RefSeq | XP_021728984.1 | protein DETOXIFICATION 42-like [Chenopodium quinoa] | 0 |
| Q9SYD6 | Protein DETOXIFICATION 42 OS=Arabidopsis thaliana OX=3702 GN=DTX42 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KM61 | Protein DETOXIFICATION OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology