Basic Information
Locus ID:
Ah004889
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 616660 | 623319 | - | Ah004889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 98,341.07 Da | 38.99 | 78.39 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 414 | 470 | 1.31592E-28 | - |
| Pfam | PF01426 | BAH domain | 148 | 246 | 7.6E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 476 | 837 | 4.1E-34 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 415 | 471 | 1.5E-10 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 301 | 838 | 2.43E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 401 | 471 | 8.8E-15 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 286 | 392 | 3.6E-14 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 76 | 242 | 5.6E-46 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 413 | 856 | 2.1E-221 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 633 | 804 | 2.1E-221 | - |
| SMART | SM00439 | BAH_4 | 138 | 257 | 6.9E-17 | IPR001025 |
| SMART | SM00298 | chromo_7 | 414 | 473 | 2.2E-7 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 483 | 835 | 7.6E-31 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 302 | 845 | 45.008129 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 138 | 257 | 15.731389 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 415 | 471 | 13.969301 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 485 | 497 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 438 | 458 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 574 | 587 | 8.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 303 | 319 | 8.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 528 | 542 | 8.7E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021771965.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KLX9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology