Basic Information
Locus ID:
Ah004886
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 603533 | 609508 | - | Ah004886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 105,364.23 Da | 40.09 | 85.89 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 626 | 899 | 2.88443E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 160 | 193 | 5.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 371 | 407 | 0.85 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 429 | 470 | 1.2E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 72 | 108 | 1.5E-6 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 623 | 892 | 4.0E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 597 | 896 | 4.26E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 95 | 483 | 4.65E-44 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 698 | 921 | 4.3E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 585 | 697 | 1.6E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 71 | 368 | 9.6E-69 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 370 | 495 | 6.6E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 433 | 457 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 157 | 180 | 0.0023 | IPR003591 |
| SMART | SM00220 | serkin_6 | 620 | 900 | 7.5E-40 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 231 | 254 | 42.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 435 | 458 | 7.319219 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 620 | 900 | 40.809818 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 626 | 648 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 745 | 757 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 968 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 515 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021728852.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KLX7 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology