Basic Information
Locus ID:
Ah004855
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_579_HRSCAF_742 | 381261 | 391130 | + | Ah004855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 79,758.07 Da | 60.20 | 57.72 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 252 | 571 | 3.6E-72 | IPR000490 |
| Pfam | PF07983 | X8 domain | 587 | 658 | 1.1E-19 | IPR012946 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 39 | 108 | 4.8E-19 | IPR000504 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 252 | 572 | 1.03E-75 | IPR017853 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 33 | 141 | 5.51E-27 | IPR035979 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 251 | 579 | 2.0E-106 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 583 | 679 | 1.2E-8 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 29 | 168 | 4.5E-26 | IPR012677 |
| SMART | SM00768 | X8_cls | 586 | 671 | 4.7E-46 | IPR012946 |
| SMART | SM00360 | rrm1_1 | 38 | 111 | 4.4E-21 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 37 | 115 | 17.25057 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 180 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021728822.1 | glucan endo-1,3-beta-glucosidase 4-like [Chenopodium quinoa] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KLV4 | RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology