Basic Information
Locus ID:
Ah004732
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 112118087 | 112120863 | - | Ah004732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.10 | 23,025.01 Da | 59.73 | 69.82 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14368 | Probable lipid transfer | 30 | 103 | 1.2E-4 | IPR016140 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 201 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021855960.1 | proline-rich receptor-like protein kinase PERK2 isoform X2 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9R7G3 | AAI domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_098210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14841, gene_14846, gene_1931 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah004731, Ah004732, Ah004733, Ah004734, Ah004735 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g098120, BVRB_5g098130, BVRB_5g098140 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg12924, Sbi_jg12925, Sbi_jg4916, Sbi_jg4919, Sbi_jg7185 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12841, Seu_jg12848, Seu_jg8918, Seu_jg8919 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001500 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5BG0000650, CQ.Regalona.r1.5BG0000700 ... |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG10.190, evm.TU.LG10.205, evm.TU.LG10.207 ... |