Basic Information
Locus ID:
Ah004683
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 111612054 | 111631485 | - | Ah004683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 93,408.00 Da | 46.35 | 88.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 456 | 6.41942E-53 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.41885E-127 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 1.6E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 309 | 398 | 4.6E-10 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 437 | 612 | 6.46E-8 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 462 | 2.39E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 571 | 7.1E-48 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 574 | 674 | 2.4E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 280 | 1.2E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 3.2E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 327 | 447 | 2.8E-14 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 388 | 2.0E-124 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.81951 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 490 | 16.374662 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 831 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021768372.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MCW2 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology