Basic Information
Locus ID:
Ah004494
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 109752371 | 109768549 | + | Ah004494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 115,570.63 Da | 46.39 | 72.36 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 718 | 1035 | 1.77234E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 809 | 847 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 899 | 931 | 0.0045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 721 | 1036 | 1.83E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 281 | 537 | 1.02E-13 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 697 | 1039 | 1.8E-125 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 283 | 542 | 1.8E-17 | - |
| SMART | SM00320 | WD40_4 | 765 | 804 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 942 | 981 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 715 | 754 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 998 | 1037 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 893 | 931 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 807 | 847 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 850 | 889 | 0.11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 771 | 813 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 900 | 940 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 900 | 933 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 814 | 856 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 918 | 932 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 791 | 805 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 918 | 932 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 834 | 848 | 5.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 791 | 805 | 5.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LWF1 | Protein SPA1-RELATED 2-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology