Basic Information
Locus ID:
Ah004373
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 108479500 | 108488081 | - | Ah004373 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 32,235.15 Da | 45.15 | 81.46 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 201 | 272 | 4.71056E-9 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 220 | 273 | 9.3E-8 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 39 | 102 | 1.5E-6 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 117 | 184 | 6.0E-6 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 113 | 185 | 1.25E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 11 | 104 | 1.1E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 201 | 273 | 1.51E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 198 | 271 | 5.9E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 9 | 108 | 2.1E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 111 | 188 | 1.8E-10 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021852062.1 | uncharacterized protein LOC110791611 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9REE3 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |