Basic Information
Locus ID:
Ah004372
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 108471150 | 108473803 | - | Ah004372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 31,436.38 Da | 43.50 | 80.36 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 35 | 114 | 8.95923E-12 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 55 | 111 | 1.8E-5 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 128 | 187 | 8.43E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 22 | 114 | 9.58E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 203 | 274 | 5.06E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 24 | 117 | 6.5E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 127 | 195 | 4.8E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 197 | 272 | 1.4E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021858968.1 | uncharacterized protein LOC110798127 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9S3K2 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_003160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |