Basic Information
Locus ID:
Ah004371
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the 'GDSL' lipolytic enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 108452299 | 108470097 | - | Ah004371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 53,104.55 Da | 47.25 | 79.61 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 389 | 457 | 9.0385E-8 | - |
| CDD | cd01763 | Ubl_SUMO_like | 32 | 111 | 9.31581E-14 | - |
| CDD | cd01763 | Ubl_SUMO_like | 227 | 302 | 4.98221E-11 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 390 | 458 | 2.3E-10 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 53 | 107 | 1.2E-6 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 21 | 111 | 1.69E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 211 | 302 | 1.26E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 389 | 465 | 3.11E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 118 | 185 | 1.27E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 116 | 188 | 1.4E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 22 | 113 | 7.7E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 219 | 306 | 6.5E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 386 | 461 | 2.7E-11 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 390 | 466 | 9.068664 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021765589.1 | uncharacterized protein LOC110730122 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9S3K2 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_003160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |