Basic Information
Locus ID:
Ah004369
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 108448376 | 108450413 | - | Ah004369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 35,130.36 Da | 41.42 | 85.18 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 46 | 105 | 6.73122E-8 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 238 | 301 | 1.2E-7 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 236 | 303 | 1.63E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 107 | 4.14E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 228 | 303 | 5.0E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 135 | 211 | 7.4E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 7 | 109 | 4.5E-13 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_021768257.1 | uncharacterized protein LOC110732604 [Chenopodium quinoa] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LTV5 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |