Basic Information
Locus ID:
Ah004342
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Histone-lysine n-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 108203023 | 108213913 | + | Ah004342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 81,965.91 Da | 45.42 | 60.57 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10519 | SET_EZH | 605 | 703 | 1.93022E-63 | - |
| Pfam | PF18264 | CXC domain | 541 | 572 | 4.5E-8 | IPR041355 |
| Pfam | PF00856 | SET domain | 643 | 701 | 2.3E-10 | IPR001214 |
| SUPERFAMILY | SSF82199 | SET domain | 503 | 705 | 9.05E-42 | - |
| Gene3D | G3DSA:2.170.270.10 | SET domain | 503 | 704 | 6.4E-50 | - |
| SMART | SM00317 | set_7 | 582 | 708 | 7.8E-21 | IPR001214 |
| SMART | SM01114 | CXC_2 | 537 | 574 | 2.8E-10 | IPR033467 |
| ProSiteProfiles | PS51633 | CXC domain profile. | 489 | 588 | 23.418161 | IPR026489 |
| ProSiteProfiles | PS50280 | SET domain profile. | 382 | 702 | 12.219681 | IPR001214 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 366 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Reaction:
R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine)
R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine)
R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine)
R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23380.1 | SET domain-containing protein. Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant. | 0 |
| RefSeq | XP_021765608.1 | histone-lysine N-methyltransferase CLF-like isoform X1 [Chenopodium quinoa] | 0 |
| P93831 | Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana OX=3702 GN=CLF PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QLW0 | [histone H3]-lysine(27) N-trimethyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_164270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35113, jg40015 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15041, gene_19265 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000105, Ah004342, Ah005404, Ah005405 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g106820, BVRB_5g121850 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11656, Seu_jg25585 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004473, GOSA_00010875 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51274, Sgl54528, Sgl56576, Sgl59869 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30008100, pistato.v30206130 |
| Apiaceae | Apium graveolens | 4 | Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G005060, COCNU_11G000180, COCNU_16G004410 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696622, gene-LOC103713764, gene-LOC103724029 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23380.1, AT4G02020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g02390.v2.2, Sp6g01900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g020410.2N, BniB08g044480.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1333, Ceq06G1050 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1338, Cgl06G1092 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g06510, gene.Cymno18g03860 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0011s00040.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09320, gene.Thate05g09090 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2109, evm.TU.LG04.450 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00024947, Pov_00029191, Pov_00029199 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb8G36103, Lb8G36104, Lb8G36105 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467 |
| Poaceae | Oryza coarctata | 3 | Oco06G014810, Oco11G007280, Oco12G007370 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g19480.1, LOC_Os06g16390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G377500, gene-BS78_10G055000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G329400, Tel7E01G260300, Tel7E01G260700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb014730_P001, Zm00001eb271490_P005 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3518, nbis-gene-5096 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29163, Zma_g3769 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc07g04650, gene.Posoc07g12580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17281, nbisL1-mrna-21472 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20015, nbisL1-mrna-8423 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11917, nbisL1-mrna-18542 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.629, evm.TU.utg000011l.1134 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007791, Maker00009601 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15493, nbisL1-mrna-1612 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3234, nbisL1-mrna-5293 |
| Salicaceae | Populus euphratica | 4 | populus_peu14405, populus_peu23376, populus_peu27351 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616927, gene-LOC132623421, gene-LOC132644930 |
| Solanaceae | Solanum chilense | 3 | SOLCI000735100, SOLCI000869500, SOLCI001076900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001506, gene-LOC107011481, gene-LOC107014997 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17331, gene_3847 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G1756, TC07G1795, TC07G2777 |
| Zosteraceae | Zostera marina | 2 | Zosma02g18570.v3.1, Zosma05g30470.v3.1 |