Basic Information
Locus ID:
Ah004167
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 106125633 | 106178039 | - | Ah004167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 483,210.19 Da | 44.82 | 89.29 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1961 | 2114 | 6.8E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2187 | 2334 | 8.9E-9 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 155 | 396 | 1.5E-66 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 728 | 2.3E-19 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3170 | 3444 | 1.4E-14 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 53 | 130 | 9.7E-19 | IPR026854 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4291 | 4316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4291 | 4322 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021768085.1 | uncharacterized protein LOC110732449 isoform X2 [Chenopodium quinoa] | 0 |
| Q5THJ4 | Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LUA7 | PH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology