Basic Information
Locus ID:
Ah004001
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 104097188 | 104120569 | + | Ah004001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 101,647.72 Da | 45.79 | 83.96 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 735 | 890 | 9.16597E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 889 | 2.4E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 42 | 140 | 8.7E-21 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 17 | 140 | 2.75E-25 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 313 | 892 | 1.73E-111 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 10 | 153 | 2.2E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 606 | 899 | 2.0E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 154 | 240 | 6.7E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 298 | 514 | 1.2E-69 | - |
| SMART | SM00695 | dusp | 37 | 143 | 1.4E-25 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 140 | 18.667709 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 315 | 892 | 58.671677 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 316 | 331 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 834 | 851 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_021767941.1 | ubiquitin carboxyl-terminal hydrolase 10-like [Chenopodium quinoa] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803L5D7 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology