Basic Information
Locus ID:
Ah003710
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 100432818 | 100441777 | + | Ah003710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 54,567.70 Da | 43.83 | 72.92 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 471 | 5.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 341 | 1.6E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 228 | 282 | 4.2E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 386 | 0.0039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 174 | 479 | 1.24E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 167 | 475 | 3.2E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 4.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 471 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 298 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 386 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 258 | 0.017 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 439 | 472 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 341 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 350 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 439 | 472 | 11.919224 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 458 | 472 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_021735944.1 | protein FIZZY-RELATED 2-like [Chenopodium quinoa] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXT9 | ANAPC4_WD40 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology