Basic Information
Locus ID:
Ah003384
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
CPK13
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 93399467 | 93409067 | + | Ah003384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 64,160.72 Da | 42.79 | 86.51 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 58 | 312 | 9.38822E-128 | - |
| CDD | cd00051 | EFh | 471 | 533 | 9.01939E-20 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 61 | 312 | 1.6E-70 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 470 | 533 | 2.1E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 398 | 458 | 1.4E-7 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 381 | 558 | 1.86E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 313 | 3.37E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 146 | 326 | 1.5E-57 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 340 | 534 | 4.9E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 145 | 4.9E-24 | - |
| SMART | SM00220 | serkin_6 | 59 | 316 | 9.5E-88 | IPR000719 |
| SMART | SM00054 | efh_1 | 471 | 499 | 1.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 507 | 535 | 1.5E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 435 | 463 | 19.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 399 | 427 | 0.0015 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 503 | 538 | 14.5413 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 395 | 430 | 14.792358 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 318 | 44.625999 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 467 | 502 | 15.378162 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 408 | 420 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 516 | 528 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 179 | 191 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 480 | 492 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_021744705.1 | calcium-dependent protein kinase 13 [Chenopodium quinoa] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MK62 | Calcium-dependent protein kinase 13 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology