Basic Information
Locus ID:
Ah002944
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 79151023 | 79179483 | + | Ah002944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 124,564.94 Da | 42.82 | 75.17 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 196 | 519 | 1.28194E-161 | - |
| CDD | cd00121 | MATH | 55 | 178 | 2.89985E-39 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 618 | 791 | 5.5E-48 | IPR024729 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 793 | 845 | 2.9E-10 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1042 | 2.7E-39 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 514 | 7.4E-42 | IPR001394 |
| Pfam | PF00917 | MATH domain | 60 | 180 | 1.5E-19 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 545 | 6.28E-92 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 186 | 5.89E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 518 | 1.5E-83 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 678 | 794 | 2.7E-44 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 194 | 6.9E-52 | IPR008974 |
| SMART | SM00061 | math_3 | 55 | 159 | 6.5E-20 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 517 | 36.898861 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 38.775414 | IPR002083 |
| ProSitePatterns | PS00304 | Small, acid-soluble spore proteins, alpha/beta type, signature 1. | 604 | 613 | - | IPR018126 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 533 | 553 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_021721291.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RIK2 | ubiquitinyl hydrolase 1 OS=Spinacia oleracea OX=3562 GN=SOVF_067780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology