Basic Information
Locus ID:
Ah002165
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 43583117 | 43595294 | + | Ah002165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 58,149.66 Da | 57.97 | 85.76 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 342 | 516 | 3.66452E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 104 | 2.6E-12 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 341 | 445 | 2.9E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 472 | 7.19E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 121 | 1.6E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 323 | 516 | 3.7E-71 | - |
| SMART | SM00232 | pad1_6 | 341 | 469 | 4.2E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 342 | 472 | 30.248503 | IPR037518 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021727742.1 | AMSH-like ubiquitin thioesterase 1 [Chenopodium quinoa] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBA7 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_086080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology