Basic Information
Locus ID:
Ah002107
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 41355440 | 41368740 | + | Ah002107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 42,141.90 Da | 51.49 | 69.84 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 294 | 322 | 8.2E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 256 | 279 | 3.6E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 293 | 323 | 1.41E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 252 | 283 | 2.39E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 324 | 356 | 9.7E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 288 | 323 | 1.1E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 247 | 286 | 7.5E-12 | - |
| SMART | SM00547 | zf_4 | 329 | 353 | 0.0031 | IPR001876 |
| SMART | SM00547 | zf_4 | 296 | 320 | 1.9E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 258 | 282 | 9.5E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 327 | 356 | 8.614459 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 294 | 323 | 10.251829 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 256 | 285 | 9.529128 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 298 | 317 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 331 | 350 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 260 | 279 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021736340.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology