Basic Information
Locus ID:
Ah001977
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 36009182 | 36016387 | - | Ah001977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 32,504.54 Da | 31.01 | 112.02 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 143 | 278 | 2.0E-24 | IPR001245 |
| Pfam | PF00139 | Legume lectin domain | 21 | 142 | 7.2E-21 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 21 | 141 | 2.68E-20 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 142 | 276 | 1.94E-39 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 145 | 216 | 2.8E-23 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 18 | 143 | 3.0E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 217 | 284 | 1.7E-14 | - |
| SMART | SM00220 | serkin_6 | 139 | 286 | 5.1E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 139 | 287 | 22.605225 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 145 | 168 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 263 | 275 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55550.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_021856967.1 | L-type lectin-domain containing receptor kinase S.4-like [Spinacia oleracea] | 0 |
| Q9M2S4 | L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana OX=3702 GN=LECRKS4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R6S0 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_100090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah001977 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267630 |
| Brassicaceae | Brassica nigra | 1 | BniB02g024140.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2160 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007504 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G400000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG084160 |