halophFGD

Basic Information

Locus ID: Ah001207

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_552_HRSCAF_710	13140663	13141807	+	Ah001207

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.25	37,871.01 Da	46.16	82.54	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	16	49	4.9E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	13	64	1.44E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	16	52	4.5E-7	-
SMART	SM00256	fbox_2	18	58	1.6E-7	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	79	281	2.7E-18	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	12	72	9.100053	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021719061.1	F-box protein CPR30-like [Chenopodium quinoa]	0
TrEMBL	A0A803L8R8	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	29	gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... gene_12833, gene_13687, gene_13691, gene_13692, gene_13693, gene_13694, gene_13696, gene_13697, gene_13698, gene_13699, gene_13716, gene_13748, gene_13894, gene_13895, gene_19546, gene_19554, gene_19555, gene_22758, gene_5204, gene_7945, gene_7946, gene_8690, gene_8691, gene_8693
Amaranthaceae	Atriplex hortensis	24	Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... Ah000696, Ah000697, Ah000700, Ah000701, Ah000705, Ah001044, Ah001150, Ah001198, Ah001199, Ah001205, Ah001207, Ah001265, Ah018107, Ah024122, Ah030707, Ah030865, Ah030866, Ah035819
Amaranthaceae	Beta vulgaris	1	BVRB_5g116570
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... Sbi_jg58760, Sbi_jg58781
Amaranthaceae	Salicornia europaea	3	Seu_jg16516, Seu_jg28633, Seu_jg28651
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... GOSA_00015001
Amaranthaceae	Suaeda glauca	31	Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... Sgl12280, Sgl12356, Sgl16239, Sgl17326, Sgl17464, Sgl17510, Sgl17636, Sgl24281, Sgl29456, Sgl34160, Sgl34161, Sgl34162, Sgl39794, Sgl45422, Sgl45476, Sgl55268, Sgl55270, Sgl55271, Sgl55289, Sgl60533, Sgl60535, Sgl60555, Sgl79945, Sgl82377, Sgl82378
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... gene:ENSEOMG00000006320, gene:ENSEOMG00000007498, gene:ENSEOMG00000008056, gene:ENSEOMG00000011411, gene:ENSEOMG00000015361, gene:ENSEOMG00000015503, gene:ENSEOMG00000023015, gene:ENSEOMG00000023968, gene:ENSEOMG00000024282, gene:ENSEOMG00000024366, gene:ENSEOMG00000024685, gene:ENSEOMG00000024870, gene:ENSEOMG00000025823, gene:ENSEOMG00000026035, gene:ENSEOMG00000026127, gene:ENSEOMG00000033242
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... CQ.Regalona.r1.5AG0022160, CQ.Regalona.r1.5AG0022370, CQ.Regalona.r1.5AG0022400, CQ.Regalona.r1.5AG0022420, CQ.Regalona.r1.5AG0022430, CQ.Regalona.r1.5AG0022480, CQ.Regalona.r1.5AG0022490, CQ.Regalona.r1.5AG0022500, CQ.Regalona.r1.5BG0020380, CQ.Regalona.r1.5BG0023570, CQ.Regalona.r1.5BG0023770, CQ.Regalona.r1.5BG0023800, CQ.Regalona.r1.5BG0023810, CQ.Regalona.r1.5BG0023850, CQ.Regalona.r1.5BG0023860, CQ.Regalona.r1.5BG0023870, CQ.Regalona.r1.7AG0011730, CQ.Regalona.r1.8BG0006100, CQ.Regalona.r1.8BG0013090, CQ.Regalona.r1.8BG0014890, CQ.Regalona.r1.8BG0015780
Plumbaginaceae	Limonium bicolor	2	Lb2G10874, Lb3G17282
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... evm.TU.LG01.2541, evm.TU.LG01.2543, evm.TU.LG01.2544, evm.TU.LG01.2545, evm.TU.LG02.884, evm.TU.LG14.1673, evm.TU.LG14.1674, evm.TU.LG14.1675, evm.TU.LG14.1680, evm.TU.LG14.1681, evm.TU.LG14.1682, evm.TU.LG14.1683