Basic Information
Locus ID:
Ah001206
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 13134763 | 13137216 | + | Ah001206 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 53,260.30 Da | 49.53 | 83.88 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 269 | 389 | 7.9E-6 | IPR006527 |
| Pfam | PF00646 | F-box domain | 8 | 48 | 1.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 54 | 4.06E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 48 | 8.2E-9 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 1.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 141 | 386 | 1.5E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 51 | 11.405066 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_021844714.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9QEF4 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_188480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25372 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah001202, Ah001206, Ah022052 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg29762, Sbi_jg29763, Sbi_jg29764, Sbi_jg30203 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg14445, Seu_jg14446, Seu_jg14451, Seu_jg18609 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014214 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13216, Sgl18431 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052662 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0016190, CQ.Regalona.r1.6BG0017350 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.203 |