Basic Information
Locus ID:
Ah001083
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 11455047 | 11470241 | - | Ah001083 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 109,232.76 Da | 32.13 | 106.53 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 136 | 430 | 1.26809E-78 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 456 | 655 | 6.96122E-109 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 757 | 968 | 8.33884E-49 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 837 | 970 | 4.7E-14 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 473 | 607 | 1.2E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 139 | 386 | 1.7E-21 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 125 | 438 | 5.89E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 452 | 680 | 7.73E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 754 | 975 | 1.44E-27 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 722 | 975 | 2.4E-33 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 124 | 436 | 4.0E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 437 | 699 | 1.3E-71 | IPR027417 |
| SMART | SM00382 | AAA_5 | 482 | 655 | 1.6E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 758 | 968 | 21.320398 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 135 | 422 | 27.750935 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 456 | 678 | 21.928883 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 580 | 594 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.2 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021855160.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L8V8 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology