Basic Information
Locus ID:
Ah001008
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 10339631 | 10352114 | - | Ah001008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 130,486.11 Da | 49.90 | 80.86 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 511 | 657 | 9.22123E-20 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1022 | 1064 | 7.9645E-20 | - |
| CDD | cd12108 | Hr-like | 4 | 80 | 1.5053E-8 | - |
| Pfam | PF05495 | CHY zinc finger | 891 | 967 | 3.1E-14 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1020 | 1063 | 9.7E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 959 | 1015 | 2.48E-16 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1020 | 1069 | 3.89E-8 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 502 | 706 | 2.1E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1015 | 1066 | 7.6E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 202 | 350 | 1.3E-6 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 4 | 99 | 9.5E-9 | - |
| SMART | SM00184 | ring_2 | 1022 | 1063 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 884 | 954 | 23.495636 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1022 | 1064 | 11.427062 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 957 | 1021 | 26.072786 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L903 | Zinc finger protein BRUTUS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology