Basic Information
Locus ID:
Ah000980
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_552_HRSCAF_710 | 10021278 | 10027017 | + | Ah000980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 32,362.51 Da | 52.29 | 78.13 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 9 | 51 | 1.8E-6 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 95 | 275 | 9.2E-37 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 91 | 3.27E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 124 | 1.4E-7 | - |
| SMART | SM00256 | fbox_2 | 12 | 52 | 0.0037 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02250.1 | phloem protein 2-B2. | 0 |
| RefSeq | XP_021761672.1 | putative F-box protein PP2-B12 [Chenopodium quinoa] | 0 |
| Q9ZVR5 | Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2 | 0 | |
| TrEMBL | A0A803M1A6 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah000980 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005361, gene:ENSEOMG00000022751 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0021320, CQ.Regalona.r1.5BG0022660 |