HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Ah000964
Species & Taxonomic ID: Atriplex hortensis & 34272
Genome Assembly: Atriplex hortensis v2.0
Description: F-Box protein
Maps and Mapping Data
Chromosome Start End Strand ID
Scaffold_552_HRSCAF_710 9840367 9849209 + Ah000964
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.79 22,663.78 Da 46.64 82.18 -0.28
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF14299 Phloem protein 2 104 142 2.4E-8 IPR025886
SUPERFAMILY SSF81383 F-box domain 4 65 2.88E-11 IPR036047
Gene3D G3DSA:1.20.1280.50 - 2 130 2.5E-5 -
ProSiteProfiles PS50181 F-box domain profile. 5 51 11.140122 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G02240.1 F-box family protein. 0
RefSeq XP_021850976.1 putative F-box protein PP2-B12 [Spinacia oleracea] 0
Swiss-Prot Q3E6P4 F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1 0
TrEMBL A0A0K9RW88 F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_021320 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 10 Ah000958, Ah000960, Ah000963, Ah000964, Ah000966, Ah000968 ...
Ah000971, Ah000975, Ah000976, Ah000979
Plantaginaceae Plantago ovata 1 Pov_00003245
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.